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My wife's employer incorrectly applied a tax free scholarship to her income for the year, which means taxes were taken out of it. They realized their mistake and provided a corrected W2, but the only items they updated were boxes 1, 3 & 5. When I filed our 2024 taxes it told me to reduce the social security tax line by the overage and to send in a form 843 for a refund, which is what I did. We recently received a letter response from the IRS stating form 843 isn't correct and we needed to complete an amended return. Everything i've found on the internet and this website states form 843 is needed when social security tax is overpaid by 1 employer. I'm not sure where to go from here since i've submitted the 843 and the IRS is saying we need to do an amended return, but when I do that it says nothing has changed. What do I do at this point? Thanks for any help you can provide.

WHen I check  IT-203-F  in the Forms mode I see empty Schedule B until I click the description of the stock. Then another frame pops-up and I see numbers which I provided. But oveall I do not see Schedule B generated. 

TurboTax askes me if I have a 1099-Q to file. Once you check yes, it required me to subscribe to deluxe to full out this form. On the website https://turbotax.intuit.com/personal-taxes/online/free-edition.jsp#tax-forms is says the 1099-Q is included in the free version. How should I fix this error? Or do I need to file my taxes elsewhere. I called and the phone was no help, requiring me to pay for assistance when this is simply a computer error not a tax question.