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Generally, you are correct that home equity debt is paid off before home acquisition debt. However, in your case, since you are using the home equity debt as a rental expense, the IRS actually allows the reverse, for the home acquisition debt to be paid off first. This should be beneficial since a rental expense often is of better use than an itemized deduction.
You can divide this mortgage up between the portion that is considered home acquisition debt and the portion that is home equity debt that you used to purchase your rental property. To do it in TurboTax, start with your personal deduction for the home acquisition debt:
You will report the rental interest as a rental expense.
Thank you for a very helpful answer, especially the IRS link, #4  on the home mortgage and where to report the rental interest. You answered all my questions perfectly.
Regarding the loan fees & points, I can take the same rental usage percent and list it as an asset that is amortized over the life of the loan. Correct? Thanks again.
Yes, you can amortize the points and fees allocable to the rental as a rental expense. The remainder of the points may be amortized as an itemized deduction. Be sure not to include the points reported in the rental section as a personal deduction:
Thank you, I'm glad I was able to help.
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