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You eliminate the "double tax" issue by using the correct basis when you report the sale. The correct basis is not the out of pocket cost you paid to acquire the stock you sold. The "spread" between the cost of exercise and the lower of the fair market value at exercise of the selling price gets added to your out of pocket cost. Assuming you sold at a per share price higher than the per share "fair market value" at exercise, that per share "fair market value" is your per share cost basis.
Enter the sale exactly as it reads, wrong basis and all. Then click on the "I'll enter additional info on my own" blue button. On the next page enter the correct basis in the "Corrected cost basis" box. The correct basis is (number of shares sold) x (correct per share basis, which includes the compensation per share)
TurboTax will report the sale on Form 8949 "as reported by the broker" but will put an adjustment figure into column (g) of the Form, a code "B" into column (f) of the Form, and the correct amount of gain or loss which includes the adjustment.
Tom Young
"if the 1099 isn't negative (income recognized on my W2), doesn't that double tax on the ($15k) W2 income as well as the (positive) income on the 1099? "
You have to understand that the sale of the stock is a completely separate, a completely independent transaction, except that the compensation helps set the basis. Having set the basis you're going to have a gain if the selling price is higher than the basis and you're going to have a loss is the selling price is lower. And that's all there is to it. The "double tax" issue is COMPLETELY ELIMINATED if you use the CORRECT BASIS.
So you said you spent $3K to exercise and the exercise created $15K of compensation, so the total basis for that GROSS number of shares in the grant - we'll call that "X" - is $18K. So your per share basis is $18K/X. What is that number? What was the per share selling price?
Very helpful.
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