Can my IRA custodian pull fees for my taxable accounts from my IRA? Or can I only pull fees that are applicable to my IRA from my IRA?

[macuser_22]

Of course it would be a distribution if paying for anything outside the management of the IRA.  

Your question was "Can they pull fees", yes, they probably *can* with the proper authorization, the real question is *would* they do that.  I highly doubt that Schwab would even do that since that would require them to account separately for the fees to manage the IRA and fees to manage outside of the IRA and the  issue a 1099-R at the end of the year showing the taxable distribution form the IRA that would be a normal distribution subject to normal tax.

The reason you find noting about "fees" in IRS Pub 590B is the tax law is not written to say what you cannot do, tax laws say what you can do and how it is taxed.  If you do not find a law that says that you can do something then yiu can't.

[TomD8]

A pertinent web reference:
"As a result of the prohibited transaction treatment in particular, it’s absolutely crucial not to have a retirement account pay someone’s personal bills or engage in inappropriate transactions – which includes not allowing your retirement accounts to pay investment advisory fees for your personal, non-retirement accounts!"  <a rel="nofollow" target="_blank" href="https://www.kitces.com/blog/irs-rules-for-paying-investment-fees-from-taxable-and-retirement-account...>.

[TomD8]

Not only would withdrawal of IRA funds to pay fees for an unrelated account be a taxable distribution, but the 10% early withdrawal penalty would also apply if you're under age 59 1/2.

[fanfare]

Here's a thought: move your IRAs to a broker that does not charge maintenance fees.

[TomD8]

According to Schwab's website, they charge no fees to open or maintain an IRA account.  <a rel="nofollow" target="_blank" href="https://www.schwab.com/public/schwab/investing/accounts_products/accounts/ira">https://www.schwab.co...>

[macuser_22]

The OP said "investment advisory fees".   Schwab does indeed have some paid investment services ranging from .28% to .90% of invested assets - fees vary.