Broker included the sale on Form 1099B BoxE (basis not reported to IRS) and also the same sale on a From 1099R because it was an IRA distribution.
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It seems likely that you need to amend your 2016 tax return. However, both transactions still must be reported.
The reporting by the broker suggests that your shares were distributed from the IRA in-kind, then subsequently sold outside the IRA. The key to making your tax return correct is that the cost basis of the sale reported on the Form 1099-B is the FMV on the date of the distribution of these shares from the IRA (the amount of the gross distribution from the IRA).
Since you asserted that both forms are for the same shares, when amending in TurboTax, simply change the box 1e Cost or other basis amount on TurboTax's 1099-B entry form to show the amount of the gross distribution from the Form 1099-R.
It seems likely that you need to amend your 2016 tax return. However, both transactions still must be reported.
The reporting by the broker suggests that your shares were distributed from the IRA in-kind, then subsequently sold outside the IRA. The key to making your tax return correct is that the cost basis of the sale reported on the Form 1099-B is the FMV on the date of the distribution of these shares from the IRA (the amount of the gross distribution from the IRA).
Since you asserted that both forms are for the same shares, when amending in TurboTax, simply change the box 1e Cost or other basis amount on TurboTax's 1099-B entry form to show the amount of the gross distribution from the Form 1099-R.
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