Yes.
The direct deposit will be put into the account that matches the
routing and account numbers you entered. If you used the account number for
your checking account, then that will be the account your refund is deposited
to.
Many banks will make simple corrections when there is a minor
error in this type of deposit.
If the refund can't be successfully deposited to the
account you selected, the IRS may elect to mail a paper check instead.