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You can go to the 1099-R entry and delete it.
Here is how to do this in TurboTax Online:

For the downloaded versions, not online.
Using the interview process (not forms), go to Federal Taxes -> Wages & Income. In the Retirement Plans and Social Security, select the "Update" button next to IRA, ... The next page will show the forms you've entered with an "Edit" and "Delete" buttons next to each.
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