IRS rules state that HSAs can cover premiums for continuation coverage, like COBRA. Although the premium payments during unpaid leave are not COBRA, they do act as continuation coverage.
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A literal reading of the law (Section 223 of the Internal Revenue Code - https://www.law.cornell.edu/uscode/text/26/223) would suggest, "no".
The law allows for 4 situations in which you can pay for health insurance premiums from your HSA:
***Notes***
(i) refers to Cobra coverage.
(ii) refers only to LTC.
(iii) requires that you qualify if you are actually receiving unemployment benefits.
(iv) refers to people 65 and older.
So what you need to do is go to your benefits co-ordinator and see if (i) or (iii) can apply to you, since I do not know the details of what your "leave of absence" are. Show your benefits person the wording of the law to help him/her understand what the requirements are (this can be a bit different than the IRS instructions).
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