Yes, you have until April 1, 2025 to take you first RMD because you turned 73 in 2024.
Yes, you can take all your IRAs RMD from one IRA. Please see Can an account owner just take a RMD from one account for additional information.
If your distribution on 2024 Form 1099-R counts towards the 2024 RMD then you can indicate this in the follow-up question. At the end of the retirement interview you can indicate that you took all your RMD for 2024 by selecting "None of these plans failed to withdraw the RMD" on the "Did You Miss a Required Distribution From Any Retirement Accounts?" screen.
If you met all your IRA RMDs then you do not have a penalty and do not have to file Form 5329.
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