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According to
you can't prepare a 5329 using the online version of TT. You can prepare a paper version version by hand.
At this point you need to take the following steps:
(1) Prepare a 2014 Form 5329 and amend (Form 1040X) your 2014 tax return. (Amended returns are always filed on paper.) To find that 5329 form, Google "form 5329 2014 site:irs.gov".
(2) Using the 2014 Form 5329, prepare a 2015 Form 5329 and amend your 2015 tax return.
(3) Using your 2015 Form 5329, prepare a 2016 Form 5329 and complete your 2016 taxes, opting to print and mail. The Form 5329 shows "Attachment Sequence 29" and you insert it accordingly ahead of those, if any, with sequence numbers less than 29 and before any with sequence numbers greater than 29.
The IRS will eventually process these paper returns and send you a bill for underpayment interest that has accumulated over the past 2 or 3 years.
Send all the above by Certified Mail at the US Post Office (no need for anything else, e.g. return receipt or insurance, only that green slip stamped by the postal clerk). This gives you tracking information so that you can determine the precise date at which the amended returns were received by the IRS, stopping the interest clocks.
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