You can file joint or separate every year. It's your choice. Be aware of the following.
When a married couple files separate returns, they "BOTH" automatically disqualify for a number of tax deductions and credits.
- No Earned Income Credit
- No education credits.
- Things like the maximum mortgage interest deduction is cut in half for each tax filer.
- Any social security income "may" become fully taxable.
Now that's just a tiny smidgen of the things you will both potentially use. I would recommend you complete your taxes both ways to see which way "really" gives you the better result. While it's not unheard of, it is not common for a married couple to come out better by filing separate returns. So that's why I advise you check it both ways before you file anything.