You need to enter the two Forms W-2 as a single Form. If the amounts in boxes 1 - 6, and 15, 16, & 17 are not the totals for the entire year, you need to combine the amounts and enter the totals. You will then enter two localities in the same W-2 entry. You should delete both W-2s that you imported and then manually enter the combined W-2.
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