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You are correct to enter the health insurance premium information from your 1095-A in the Personal > Health Insurance section in TurboTax. This is information will be used in Form 8962 to determine any adjustment needed in the premium tax credit your received. Form 8962 Line 26 will show the resulting over/under tax credit and be transfered to your 1040 Line 69.
Since you self-employed, you are also permitted to deduct your portion of the health insurance premiums (total premium minus the premium tax credit your are permitted) as a business expenses. TurboTax will compute this amount and enter it on 1040 Line 29. If no amount amount is showing up on 1040 Line 29, go through the Personal >Health Insurance section again making sure to answer the question about being self-employed AND selecting the Schedule C to which you want to attach the deduction. When you are stepping through the questions, you have to click on "edit" when you get to the 1095-A data screen. The self-employment question is on the page after you have reviewed your 1095-a entries.
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