Yes, you should use the adjusted gross income (AGI) taking into account only the adjustment for half of your self employment tax (.9235 of the self employment income for the self employment tax deduction). The AGI uses the full self employment income then is reduced by the deduction noted.
If your self employment was earned evenly throughout the tax year, then divide it by 12 and multiply by 3/5/8 (3 months/5 months/8 months) for the appropriate period. Likewise for the IRA and the deduction for half your self employment tax. Also use any other deductions, if any. You can use this same method for any income received evenly throughout the year. This should provide the correct numbers for your annualized method.
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