It sounds like the 1099-Rs are issued correctly. The amount will show as taxable in box 2a. This is because each 1099-R has to be processed as a stand-alone item. The 1099-R showing the distribution from the Traditional account has to be manually accounted for on the tax return with the Roth IRA contribution. This is why it is commonly referred to as "backdoor" - it's a strategy that requires a little maneuvering to accomplish as there is no code to report nondeductible IRA funds going to a Roth (plus, there are some additional requirements such as not having additional traditional IRA balances).
You will find information about how to enter this in TurboTax HERE.
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