Puerto Rico was not listed as a state. Will that make the irs reject my claim?

[JohnR1]

If you have a Form W-2 showing wages earned in Puerto Rico in Box 15 (displayed as “PR”), please note that TurboTax does not support state tax returns from Puerto Rico. You can still file your federal tax return; however, you would need to file the Puerto Rico state return directly with the Commonwealth of Puerto Rico. 

Please see the following IRS publication for more information on filing a return with the Commonwealth of Puerto Rico:  http://www.irs.gov/publications/p570/ch03.html.