I paid $59 for the deluxe DIY version, return was rejected. Had to upgrade to the $60 self employed version to refile. Will I only be charged the $1?
Yes if you are in the same account then you only get charged the difference. When did you upgrade? The Self Employed version is a lot more than $60. I think it meant 60 to upgrade. The Self Employed version is $119. 119-59=60.
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