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You are correct. You will need to file an amended return with Pennsylvania. You will not need to file a Maryland return, however. Maryland and Pennsylvania are reciprocal states: you only owe taxes where you live. Unfortunately, if they didn't take any out, you are going to owe, probably a significant amount, back to Pennsylvania. I am sure you are already talking with your employer so they take out Pennsylvania (and not Maryland) tax. Here's an FAQ on reciprocal states and the form you can fill out with Maryland: https://ttlc.intuit.com/replies/4776822
In addition, here is another FAQ to assist you to prepare your amended return: https://ttlc.intuit.com/replies/5618033
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