Any version can handle the allowance taxation, assuming the church issues the W-2 correctly. When entering the church W-2, there is a box for special circumstances -- check the box for religious wages, you will be asked about the housing allowance.
However, if you want to deduct work-related expenses from the housing allowance (this is allowed even though work-related expenses can generally not be deducted from W-2 wages since 2017), you would need the Deluxe desktop version, to install on your own computer, you can buy a download from many reputable online retailers or direct from Intuit.