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Yes, you will file Form 5329 to enter the exception to the 10% early withdrawal penalty.
To confirm you received a 2024 Form 1099-R with code PJ for the return of excess contribution plus earnings made in 2023 for 2023?
If yes, then this form has to be entered on your 2023 return if you didn't file it with the original return since the earnings in box 2a are taxable in 2023. Please see How do I amend my federal tax return for a prior year?
Please be aware, code P will say in the drop-down menu "Return of contribution taxable in 2022" but you can ignore that since the follow-up question will tell TurboTax that it will be taxable in 2023.
Also make sure you indicate in the IRA contribution interview that you withdrew the excess contribution by the due date:
My question is that I never took out any money from my ROTH IRA. Even the access funds went to 2024 Tax Return Roth IRA contribution. So I never had the access funds in my hands. So it didn't make much sense to pay a penalty on excess funds. The excess funds were removed before the 2023 tax filing. Now in 2024 tax software tells me that I cannot make any ROTH IRA contribution. I still have $5777.66 of excess funds, which is carrying over from 2023. What is the best option here. Should I just take out the entire $5777.66 out from ROTH IRA and move it to traditional IRA and just pay the penalty i.e., 10%.
To clarify, you stated you received a 2024 Form 1099-R in your original post. What was the code in box 7? When you applied to excess to 2024, did you tell your financial institution that you want them to apply it as a 2024 contribution? If yes, then it seems they distributed the excess plus earnings and then made a new contribution for 2024.
If this is correct then you do not need to pay the 6% penalty on your 2023 and 2024 return since you withdrew the excess plus earnings. You made a new Roth IRA contribution for 2024 and are able to request to recharacterize this contribution as a traditional IRA contribution. Please make this request with your financial institution.
You will enter the recharacterization when you enter the contribution to the Roth IRA on your 2024 return:
You will get a 2025 Form 1099-R for the recharacterization with code R-Recharacterized IRA contribution made for 2024 and this belongs on the 2024 return. But a Form 1099-R with code R will change nothing on your return. You can only report it as mentioned above. Therefore, you can ignore the Form 1099-R with code R when you get it in 2026.
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