It appears there is an error in how TurboTax handles 1099R forms marked F in box 7. The software should carry over a portion of the distribution to line 43 of the 1099R summary and from there to Form 8960 line 3. The explanation on the 1099R summary is that the carry-over occurs only if box 7 is D. It should carry over for both D and F distributions. Non-qualified annuities are clearly subject to the NIIT.
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You’re right—income from a non-qualified annuity is subject to the Net Investment Income Tax (NIIT) under Section 1411. However, TurboTax handles Code D and Code F differently because of how the IRS defines each code.
Since Code F includes different types of income, the software doesn’t automatically map the full taxable amount to the NIIT form. This helps avoid over-taxing any part that could be excluded.
If TurboTax is not automatically carrying your Code F distribution to Form 8960, you will need to manually "tell" the software that this specific income is investment-related.
If you are using the CD/Download version, you can fix this in seconds:
If your Modified Adjusted Gross Income (MAGI) is over the threshold ($200k Single / $250k Joint), missing this entry could technically result in underpaying your tax by 3.8% of that distribution. While it’s rare for the IRS to send a letter asking you to pay more NIIT, correcting it now ensures your return is technically perfect.
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