As long as you report enough income to cover the total of the 1099-MISC, it doesn't matter if you split it up between the properties. Actually, as long as you report the income, it does not matter if you denote that it was on the 1099-MISC or not.
My recommendation would be to report multiple 1099-MISC with smaller individual amounts that total up to the amount posted on the 1099. That way, you could answer "yes" to the reporting question for each property.