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The potential 20% QBI deduction is on the pass-through income reported on Schedule K-1. Your wages that you pay yourself do not qualify for the QBI deduction. But, since you are an S-Corp, it is imperative that you are paying yourself reasonable compensation through wages and salaries (as reported on Form W-2). This is because the pass-through income from the S-Corp to you is not taxed at the corporate level (as is the case with a C Corp), but rather on your personal tax return (Form 1040). Also, this pass-through income is not subject to Social Security and Medicare tax (which are the two main appeals of S Corp status). The QBI deduction is calculated and taken on Line 9 of Form 1040 (Individual tax return).
This deduction is anything but automatic (very complicated calculation). Still, if you are using the filing status of Married Filing Joint (or Qualifying Widow/Widower), you will be entitled to the full 20% deduction of QBI calculated if your Adjusted Gross Income is $315,000 or less. With any other filing status, the threshold is $157,500.
If you are over the threshold, how much QBI deduction you may receive will depend on whether you are a Specialty Services Trade or Business (SSTB) or not and other factors. If you are over the threshold amounts and wish more information, please comment.
Also, you may find the following FAQ also helpful: https://ttlc.intuit.com/replies/7019998
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