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You may file a separate New York return if both spouses are nonresidents but only one has New York source income. This is an exception to the rule of having to file with the same federal status.
If you file jointly, all of your joint income is a factor in the calculation. That being said, joint can be better if your spouse's income is minimal.
See page 15 along the left-
https://www.tax.ny.gov/pdf/current_forms/it/it203i.pdf
If you choose to file separately, you may need to prepare a "mock" separate federal return for yourself. Turbo Tax does not automatically isolate what's yours on the federal return, so this usually requires a second username.
Alternatively, you can prepare the mock separate federal return in the same account, transmit the NY return only (do not transmit this federal return), then switch to joint and efile NJ and federal.
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