Based on the description in your question, it is being reported the way it should be.
Converting a Traditional IRA contribution to a Roth IRA is only tax-free if the Traditional IRA has only after-tax contributions in the account. Otherwise, the distribution that is taken from the Traditional IRA and converted to the Roth IRA will be partly taxable based on the amount of basis (non-taxable) in the account and the tax-deferred money in the account. It is not possible to take a distribution from a Traditional IRA and specify that only the non-taxable portion be used.
@wtang922
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