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In TurboTax, make sure after the Federal return is complete, you do the non-resident state (Missouri) next and last the resident state of Kansas.
Your KS return will have a credit for taxes paid to another state. Your resident state (KS) taxes you on all your income, regardless where earned, however will give you a credit for taxes paid on that income elsewhere so you are not doubled taxed.
It is still possible to owe some taxes to KS if you had no KS taxes withheld from your paychecks. Try this and post in comments if you need additional help.
tell your employer's HR you want to fill out federal and both states w4's to ensure proper withholding taxes.
The MO tax rate is 0 -5.4% while KS goes up to 5.7%. This means that you could owe up to 0.3% to KS after the MO credit. You can have the employer take out a little MO or you can just make an estimated payment or two to MO, here.
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