Yes, the penalty will count as taxes paid.
If you have code 1 for early distribution in Box 7:
- Enter Form 1099-R in TurboTax.
- Answer the questions until you reach the screen "Let's see if we can reduce your Early Withdrawal Penalty"
- Continue to the following screen and enter the Higher Education Expenses.
The 10% penalty won't be calculated and the amount you paid will count as taxes paid.
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