The program cannot handle both a refund & balance due on the 1040X so you will need to switch to the forms mode and enter that amount on line 16 manually. Then follow the rest of the lines to make sure it completes the calculations correctly.
Look at the form 1040X …
Column A should have the figures from the original
return, Column C the corrected figures and Column B the differences between the
other 2 which needs an explanation on page 2 of the form 1040X.
If you completed it correctly you will see an entry on
either line 16 OR 18:
On line 16 should be the amount you paid with your
original return. If you paid
nothing already then this line should be zero.
On line 18 should be the amount of your original
refund you received. If you have not
received your refund yet then you need to wait for it. If the refund changes from what you expected
then this line must reflect that change.
Then you will see your extra refund on line 22 OR
the new balance due you need to pay on line 20.