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Based on what you've written I expect that he is filing Married Filing Jointly. If that is the case, and you file a tax return claiming yourself as a dependent, it will stop the tax return process.
You may have to mail your tax return in because your Social Security Number will be flagged as a duplicate. Once the IRS processes your mailed return you will both get a notice in the mail stating that your SSN was duplicated. you will then be able to make your case for your separation. The IRS will then make a determination regarding your tax filing status.
If you had taxable income, and you didn't get any of the refund you can file for "Innocent Spouse" status.
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