The $39.99 fee you're seeing is for the Refund Processing Service (having TurboTax fees deducted from your federal refund). This fee is in addition to the Deluxe tax preparation program fee. You can avoid the fee for Refund Processing Service by paying your TurboTax fees by credit card.
You can review your TurboTax fees by using the info below:
As long as you haven't yet filed, you may be able to reduce those fees using the information below.