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The rationale is that both amounts are pre-tax. This amount is found with code "W" in box 12 on your W-2.
Since California does not allow the exclusion of HSA contributions from state income, the amount is added back to your federal income for purposes of the state.
The confusion is rooted in how the IRS uses the terminology,and TurboTax has to follow that terminology.
I still think this is incorrect.
In my W2 box 16 (State wages, tips, etc), my employer has already included BOTH the payroll deduction AND the employer contribution. So there should be no additional CA income since it's already correct on the W2.
It is correct, because the California tax return computes your state taxes based on your Federal Adjusted Gross Income, and no matter whether your employer included the HSA contributions in box 16 of your W-2 or not, you will still arrive at the same taxable income for California.
You can try it for yourself by changing the amounts in box 16 in the federal section of TurboTax. The California tax will not change.
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