There are many different items that can be in box 12 of a W-2, the only thing that is HSA contributions is code W. If you have two items in box 12, both with code W, you need to get a corrected W-2 from your employer. If the printed W-2 is different from what you entered in Turbotax, and if you can't manually change it in Turbotax, you will have to delete the W-2 and re-enter it manually.