It depends. You should check the two forms described below and compare the amount you paid to the total due.
When you prepare Form 568, if you owe the annual California LLC tax, TurboTax will automatically prepare Form 3522 LLC Tax Payment Voucher to accompany your $800 payment.
The amount of tax due from California Form 540 appears on Line 111 of that form. This total does NOT include the LLC tax.
The total tax due from you would be the sum of the amount on Line 111 and the amount on Form 3522. If you paid this amount, either in one payment or two, you have not paid the LLC tax twice.
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