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The payroll company isn't likely to correct this for you as it requires them to file amended forms to both the IRS and the states involved. However, you can correct this issue yourself by filing two Part-year resident returns, one for Missouri and one for Illinois. Part-year returns allow you to allocate (divide up) the income according to where you lived when you earned it. You said there was a change of payroll companies when you moved to Illinois, so you can determine your wages by state yourself.
You will most likely end up getting a refund from Missouri and you will have to pay over the Illinois tax yourself. Don't forget the due date for your payment to Illinois is April 15, 2019, but if you file Missouri soon and select direct deposit of your refund, you may have the money in time to pay Illinois.
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