I work at a church and do security they only deducted federal but not social and medicare for the year, how do i file to where i can pay those?

[MarilynG1]

After entering your W-2, mark the box for Religious Employment on the Any Uncommon situations screen. 

TurboTax will handle preparing the Schedule SE for you.

Here's more info on Reporting Social Security and Medicare Tax for Church Employees.