we can't see the iRS notice and therefore do we know the reason it provided for limiting the depreciation.
we also don't know why Audit Defense was unable to assist you. at this point, you may need a tax pro. if anyone will take this at such a late date. if you do nothing you will owe the tax bill. you may need the pro to look over what was entered in Turbotax. if you made correct entries and there was a miscalculation you can file a claim to recoup penalties and interest. if you made errors in entering the info, Turbotax is not responsible.