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If you want to file an amended tax return after IRS accepted your tax return due to you being exempt from the insurance penalty, then you will want to wait until your original tax return is processed by the IRS. If you are receiving a refund, you should wait until the check is issued. Amended returns must be filed by mail.

The article below has the specific 2016 instructions to amend a return:

https://ttlc.intuit.com/replies/5114064

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Answer
June 1, 2019

If you want to file an amended tax return after IRS accepted your tax return due to you being exempt from the insurance penalty, then you will want to wait until your original tax return is processed by the IRS. If you are receiving a refund, you should wait until the check is issued. Amended returns must be filed by mail.

The article below has the specific 2016 instructions to amend a return:

https://ttlc.intuit.com/replies/5114064