I seem to have encountered a bug and wanted to report it, this seems to be the way to report bugs so here goes! I entered all of my info via the step-by-step interface. I then changed the view to Forms to look at the actual calculations. I noted that in Federal I had a large amount of long-term capital gains and qualified dividends that lowered my taxes considerably but in Wisconsin there was no capital gain/loss subtraction at all on Line 10. So I went to view WI Schedule WD and as soon as the form generated, my refund changed (by a considerable amount) and there was suddenly a figure on Line 10. So the bug appears to be that the Line 10 capital gain/loss subtraction is not being applied unless the form is viewed. I'm able to reproduce the problem.
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