I entered my Medicare premiums as deductible health insurance expenses on Schedule C and even though the business had a small net loss TT allowed the premiums to be fully deductible which created a larger loss. In theory health insurance premiums should be deductible only to the extent that the business has a net profit. So this seems to be a TT bug.
You must have entered it under the wrong place as health insurance you paid for your employees. What version are you using? Online Self Employed version or the Desktop program?
Where to enter Self Employed Health Insurance
https://ttlc.intuit.com/community/entering-importing/help/where-do-i-enter-my-health-insurance-premiums-if-i-m-self-employed/00/27111
How to enter in the Desktop Home & Business version
https://ttlc.intuit.com/community/entering-importing/help/where-do-i-enter-my-health-insurance-premiums-in-turbotax-cd-download-home-business-if-i-m-self/00/26387
You must have entered it under the wrong place as health insurance you paid for your employees. What version are you using? Online Self Employed version or the Desktop program?
Where to enter Self Employed Health Insurance
https://ttlc.intuit.com/community/entering-importing/help/where-do-i-enter-my-health-insurance-premiums-if-i-m-self-employed/00/27111
How to enter in the Desktop Home & Business version
https://ttlc.intuit.com/community/entering-importing/help/where-do-i-enter-my-health-insurance-premiums-in-turbotax-cd-download-home-business-if-i-m-self/00/26387