Contacted previous employer and noted wanted to do a rollover for Roth 401k portion as well as tradition. Check was mailed directly to me and deposited within the 90 day period. Old employer sent 1099-R form coded as "1". Will I have to pay taxes on this even though it was rolled into a Rollover IRA?
It depends. If you rolled your traditional IRA over within 60 days (not 90 days), follow the instructions below. Your 1099-R should have a distribution code G in box 7 if it was a direct rollover but since it didn't have a code G, TurboTax directs you so you can report it as a rollover.
Refer to the TurboTax Help articles Where do I enter an IRA rollover?
If you rolled your designated Roth to another Roth IRA that you had for more than five years, then you won't have to meet the five-year holding period.
Refer to the TurboTax Blog's Roth IRA Withdrawal Rules & Penalties for more information.