Issuing a 1099 is not based on the fiscal year of your company but on a calendar year ... so even though your tax year straddles 2 calendar years the 1099-misc forms must be filed on a calendar year basis.
https://www.shrm.org/resourcesandtools/tools-and-samples/hr-qa/pages/whatisa1099-miscform.aspx
Do you mean the C-Corp needs to issue 1099-misc for sub contractors or another kind of 1099?
Issuing a 1099 is not based on the fiscal year of your company but on a calendar year ... so even though your tax year straddles 2 calendar years the 1099-misc forms must be filed on a calendar year basis.
https://www.shrm.org/resourcesandtools/tools-and-samples/hr-qa/pages/whatisa1099-miscform.aspx