You will need to review your input in a couple of areas to ensure your military pay is treated as nontaxable if you are active duty.
First review your input in the My info section of the program.
Be sure to select that you are Active Duty Military.
Now, go to your state interview section for PA. Under the Income and adjustments section, you will see a screen asking about your wage income as follows:
Select Edit to the right of the applicable W-2 as it would pertain to you.
The next screen will show you which if the income has been treated as taxable or not. Your active duty pay should show up!
If it does not, please comment again so we can help you determine why the income is being treated as taxable.