If you have entered all the amounts from Boxes 1,3,5,7, etc. on your W-2 correctly, don't worry about the message.
It won't affect your return or prevent you from filing; it's just to let you know to contact your employer that over-withholding should be refunded to you.
You could try deleting and re-entering your W-2 to see if the issue resolves.
Click this link for more info on Excess Employer Withholding.