I put the full amount of my self employment income into an Individual 401K. TT software says I over contributed and will pay a penalty, why? What am I inputting wrong here?
You forgot to take into account one half of SE tax.
Contribution limits for self-employed individuals
You must make a special computation to figure the maximum amount of elective deferrals and non-elective contributions you can make for yourself. When figuring the contribution, compensation is your “earned income,” which is defined as net earnings from self-employment after deducting both:
TurboTax is correct. The maximum that you are permitted to the individual 401(k) is your net profit from self-employment minus the deductible portion of self-employment taxes. With $9,975 of net profit, the deductible portion of self-employment taxes would typically be $705, leaving only $9,270 available to contribute to the individual 401(k). You must obtain a return of the excess contribution or risk the plan being disqualified.