Are you entering them this way:
1. Click Federal
on the left-hand side menu.
2. Click Income
& Expenses across the top.
3. Scroll
down to Rentals, Royalties, and Farm and click Show more.
4. Click Start
or Revisit by Rental Properties and Royalties (Sch E).
Set up your property, enter all the income and expenses, and you'll see a properly filled-out Schedule E.