Each box amount reported on your original K-1 form should only be entered one time on your return, even though you are "entering two K-1 forms".
For instance, on the first K-1 entry, enter box 1 (ordinary business income) and then enter all of the other box information reported on the K-1. Then on the second K-1 entry, only enter the box 2 (rental income) amount and leave all the other boxes blank. This way, the total of both K-1 entries into your return is that each box was entered one time.