Yes, If you already requested and set up a payment plan on the IRS website, then you will select file now, pay by check option at the end of your return with TurboTax.
No, you would not set it up through TurboTax. TurboTax doesn't actually set up the payment plan or have any involvement in it other than transferring the paperwork that you fill out to the IRS. There would be no reason to do it through TurboTax if you already did it on the IRS website.
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