TurboTax will adjust your Form MO-NRI for remote work. When you entered an amount, did the refund box change?
Form MO-NRI Part B Line A Missouri Sources should be $0. You don't say whether you are using TurboTax Online or CD/Download. If you are on CD/Download you can change the number to $0.
Finally, what is the state code (Box 15) on your W-2. If the state is not MO, then it means it wasn't being taxed by MO in the first place.
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