NO, you just indicate you will pay by check. Then you just don't send it in.
....many people use the paper check option, but then just use the state website to pay by debit...that's fairly normal.
But....You shouldn't normally set up payment until after you have actually filed, and had your e-file accepted.....though all the last minute filers are getting themselves in their own file/pay sequencing bind...
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No, you don't have a way to indicate you already paid when you file.
____________*Answers are correct to the best of my knowledge when posted, but should not be considered to be legal or official tax advice.*
