Your post is not clear about who did what, what you sent to whom, or what you are now trying to accomplish.
A tax return transcript from the IRS is not a copy of your tax return. An IRS transcript lists the information from your tax return, but it is not in the format of the actual forms. A tax return transcript from the IRS shows only the information from your original tax return. It will not show the changes made by an amended return.
If the accountant has made mistakes, the accountant should correct the mistakes at no cost to you.